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The Kalamazoo Metagenome Assembly protocol
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:author: Adina Howe and Titus Brown

This is a protocol for assembling low- and medium-diversity
metagenomes. Marine sediment and soil data sets may not be assemblable
in the cloud just yet.  It is part of khmer-protocols; see `the main
page for this version <../index.html>`__ for citation information, and
`the khmer-protocols site <http://khmer-protocols.readthedocs.org/>`__
for the latest released version.

.. toctree::
   :maxdepth: 1

   1-quality
   2-diginorm
   3-partition
   4-assemble
   5-mapping-and-quantitation
   6-annotating
   installing-blastkit